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Tool Guide:

  • Documentation
  • Installation
  • Analysis & Methods
  • Input files
  • Output files
  • Interpreting the outputs
  • DATABASE of interactions
  • Plot CellphoneDB Data: CellphoneDBViz
  • Plotting alternatives
  • Release notes
  • Tutorials
  • FAQs
  • Citing

API:

  • Install Python and Jupyter Notebook
  • Analyse Your Data using CellphoneDB methods
  • Data Preparation Functions
  • Analysis Methods
  • Database Utility Functions
cellphonedb
  • Index

Index

C | G | M | S

C

  • cellphonedb.src.core.preprocessors.counts_preprocessors
    • module
  • cellphonedb.src.core.preprocessors.method_preprocessors
    • module
  • cellphonedb.utils.db_releases_utils
    • module
  • cellphonedb.utils.db_utils
    • module
  • cellphonedb.utils.generate_input_files
    • module
  • cellphonedb.utils.search_utils
    • module
  • counts_preprocessor() (in module cellphonedb.src.core.preprocessors.counts_preprocessors)
  • create_db() (in module cellphonedb.utils.db_utils)

G

  • generate_all() (in module cellphonedb.utils.generate_input_files)
  • get_db_path() (in module cellphonedb.utils.db_utils)
  • get_html_table() (in module cellphonedb.utils.search_utils)
  • get_interactions_genes_complex() (in module cellphonedb.utils.db_utils)
  • get_remote_database_versions_html() (in module cellphonedb.utils.db_releases_utils)

M

  • meta_preprocessor() (in module cellphonedb.src.core.preprocessors.method_preprocessors)
  • module
    • cellphonedb.src.core.preprocessors.counts_preprocessors
    • cellphonedb.src.core.preprocessors.method_preprocessors
    • cellphonedb.utils.db_releases_utils
    • cellphonedb.utils.db_utils
    • cellphonedb.utils.generate_input_files
    • cellphonedb.utils.search_utils

S

  • search() (in module cellphonedb.utils.search_utils)

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