Install Python and Jupyter Notebook
It is assumed that you have Python (version >= 3.8) and Jupyter notebook installed on your computer. If not, you can:
Install Python following instructions on
https://docs.conda.io/en/latest/miniconda.html
, and thenRun
pip3 install notebook
in order to install Jupyter notebook.
Analyse Your Data using CellphoneDB methods
In order to analyse your data using CellphoneDB, you can then do the following:
cd <your_working_directory>
git clone git@github.com:ventolab/CellphoneDB.git
cd CellphoneDB/cellphonedb/notebooks
Run
jupyter notebook
Paste into your browser
http://localhost:8888/notebooks/notebooks/cellphonedb.ipynb
Follow instructions in the notebook to upload your data and analyse them using the required CellphoneDB methods.