Install Python and Jupyter Notebook

It is assumed that you have Python (version >= 3.8) and Jupyter notebook installed on your computer. If not, you can:

• Install Python following instructions on https://docs.conda.io/en/latest/miniconda.html, and then

• Run pip3 install notebook in order to install Jupyter notebook.

Analyse Your Data using CellphoneDB methods

In order to analyse your data using CellphoneDB, you can then do the following:

• cd <your_working_directory>

• git clone git@github.com:ventolab/CellphoneDB.git

• cd CellphoneDB/cellphonedb/notebooks

• Run jupyter notebook

• Paste into your browser http://localhost:8888/notebooks/notebooks/cellphonedb.ipynb

• Follow instructions in the notebook to upload your data and analyse them using the required CellphoneDB methods.